PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 770aa    MW: 82854.7 Da    PI: 5.8472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.5e-10474495526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  OBART01G20140.1 474 PCHNFMENGMCIRGDKCKFSHV 495
                      7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.676444468IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019445470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5445469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455469497IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018472496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6473496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4474494IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7474495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AAAAIPPGGS GGLPHGDSPP PADVGGDRGK NLEVEVALGN HAPHETPSTS  120
ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEVVFA GGTSGEADAD GDELGAGAGL  180
MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN NLSGLIDDAS ACVMSAQSCG  240
VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG GGFEEGEIEG DTQNLDADDS  300
GNSELQDDVE LEEDFDSRRI EEDGSCGHDL KSNLHLIPQK GNGGTARNML CNSKGDSQMH  360
VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER KAKKTKTKRI KRALQREAEG  420
VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK GDDCPYDHEL SKYPCHNFME  480
NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NASSVPEKAN CQEQTSRQKT STVYSGEPAT  540
SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN FGRPQPADGK KLGKHNGHRS  600
APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML FSDEPVAMRL CSIFCIPHTS  660
FIAVTPSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL LFNPQAYNSK SQFLIFISLQ  720
QQEANSAAKG SMPVCIHQLV LSMFLNKDLN WKVGVYLFVW DYENAKRHMT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0D3EQD00.0A0A0D3EQD0_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g39100.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.29e-06C3H family protein